PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g031585m
Common NameCISIN_1g0315851mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 158aa    MW: 17889.7 Da    PI: 8.3075
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g031585mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.31.2e-1255144998
                        HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEE CS
                 B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvk 95 
                        + lk  +l++    ++++  +k+ +    +   +g++We+ +     +k+     +++ Wk F+ +n+Lk+gD +vF+l+  r ++ +++v+
  orange1.1g031585m  55 SQLKPMNLMILPAEMRRILPSKTIP---AFLVYKGKEWEMVYLGedfQKRN--KRFGSEWKTFAIDNKLKVGDACVFELMeCRnDCLKFRVQ 141
                        4445545555555566774343443...455679********667444444..45899********************88767799999999 PP

                        EE- CS
                 B3  96 vfr 98 
                        ++r
  orange1.1g031585m 142 ILR 144
                        988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.51E-1544145IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-1444144IPR015300DNA-binding pseudobarrel domain
CDDcd100179.94E-1446144No hitNo description
SMARTSM010194.6E-748146IPR003340B3 DNA binding domain
PROSITE profilePS5086311.02548146IPR003340B3 DNA binding domain
PfamPF023621.8E-1058144IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MIGAVGSCSG KGVEDAQLKD PQFQTASKPT VIEVQGDEFW PLSGKPYFNA IISKSQLKPM  60
NLMILPAEMR RILPSKTIPA FLVYKGKEWE MVYLGEDFQK RNKRFGSEWK TFAIDNKLKV  120
GDACVFELME CRNDCLKFRV QILRGDIPSK FEDNTND*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015387618.11e-114PREDICTED: B3 domain-containing protein Os04g0386900-like isoform X2
TrEMBLA0A067E2E31e-113A0A067E2E3_CITSI; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1865456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.14e-06B3 family protein